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LKEM Bioinformatics Tools

Automated Bioinformatics Extractor (ABE)

ABE is a Java-based standalone program to annotate and analyze proteomic and transcriptomic data sets.

PhosphoScore

PhosphoScore is a phosphorylation assignment program that is compatible with all levels of tandem mass spectrometry spectra (MSn) generated through the Bioworks/Sequest platform. The program utilizes a "cost function" which takes into account both the match quality and normalized intensity of observed spectral peaks compared to a theoretical spectrum.
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